Package: func2vis
Type: Package
Title: Clean and Visualize Over Expression Results from
        'ConsensusPathDB'
Version: 1.0-3
Date: 2023-03-16
Author: Raghvendra Mall [aut, cre]
Authors@R: c(person(given = "Raghvendra",family = "Mall",role = c("aut","cre"), email = "raghvendra5688@gmail.com"))
Maintainer: Raghvendra Mall <raghvendra5688@gmail.com>
Description: Provides functions to have visualization and clean-up of
        enriched gene ontologies (GO) terms, protein complexes and
        pathways (obtained from multiple databases) using
        'ConsensusPathDB' from gene set over-expression analysis.
        Performs clustering of pathway based on similarity of
        over-expressed gene sets and visualizations similar to
        Ingenuity Pathway Analysis (IPA) when up and down regulated
        genes are known. The methods are described in a paper currently
        submitted by Orecchioni et al, 2020 in Nanoscale.
License: GPL (>= 3)
LazyLoad: true
Depends: ggplot2, igraph, devtools, ggrepel, grDevices, randomcoloR, R
        (>= 4.0)
NeedsCompilation: yes
Packaged: 2026-10-06 09:22:53 UTC; root
RoxygenNote: 7.1.1
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev
        libfribidi-dev git libglpk-dev make libharfbuzz-dev libgit2-dev
        libicu-dev libjpeg-dev libpng-dev libtiff-dev libuv1-dev
        libwebp-dev libxml2-dev libssl-dev libnode-dev libx11-dev
        zlib1g-dev
Repository: https://raghvendra5688.r-universe.dev
Date/Publication: 2023-03-16 16:30:02 UTC
RemoteUrl: https://github.com/cran/func2vis
RemoteRef: HEAD
RemoteSha: 59f41fa9894c364eb30e6acd628e2c1e60657f97